arsenal (version 3.5.0)

tableby.stats: tableby Summary Statistics Functions

Description

A collection of functions that will report summary statistics. To create a custom function, consider using a function with all three arguments and .... See the tableby vignette for an example.

Usage

arsenal_sum(x, na.rm = TRUE, ...)
arsenal_min(x, na.rm = TRUE, ...)
arsenal_max(x, na.rm = TRUE, ...)
arsenal_mean(x, na.rm = TRUE, weights = NULL, ...)
arsenal_sd(x, na.rm = TRUE, weights = NULL, ...)
arsenal_var(x, na.rm = TRUE, weights = NULL, ...)
meansd(x, na.rm = TRUE, weights = NULL, ...)
meanCI(x, na.rm = TRUE, weights = NULL, conf.level = 0.95, ...)
medianrange(x, na.rm = TRUE, weights = NULL, ...)
medianmad(x, na.rm = TRUE, weights = NULL, ...)
arsenal_median(x, na.rm = TRUE, weights = NULL, ...)
arsenal_range(x, na.rm = TRUE, ...)
gmean(x, na.rm = TRUE, weights = NULL, ...)
gsd(x, na.rm = TRUE, weights = NULL, ...)
gmeansd(x, na.rm = TRUE, weights = NULL, ...)
gmeanCI(x, na.rm = TRUE, weights = NULL, conf.level = 0.95, ...)
Nevents(x, na.rm = TRUE, weights = NULL, ...)
medSurv(x, na.rm = TRUE, weights = NULL, ...)
NeventsSurv(x, na.rm = TRUE, weights = NULL, times = 1:5, ...)
NriskSurv(x, na.rm = TRUE, weights = NULL, times = 1:5, ...)
Nrisk(x, na.rm = TRUE, weights = NULL, times = 1:5, ...)
medTime(x, na.rm = TRUE, weights = NULL, ...)
q1q3(x, na.rm = TRUE, weights = NULL, ...)
medianq1q3(x, na.rm = TRUE, weights = NULL, ...)
iqr(x, na.rm = TRUE, weights = NULL, ...)
Nmiss(x, na.rm = TRUE, weights = NULL, ...)
Nmiss2(x, na.rm = TRUE, weights = NULL, ...)
N(x, na.rm = TRUE, weights = NULL, ...)
Npct(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  ...
)
count(x, levels = NULL, na.rm = TRUE, weights = NULL, ...)
countpct(x, levels = NULL, na.rm = TRUE, weights = NULL, ...)
countN(x, levels = NULL, na.rm = TRUE, weights = NULL, ...)
countrowpct(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  ...
)
countcellpct(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  ...
)
binomCI(x, levels = NULL, na.rm = TRUE, weights = NULL, conf.level = 0.95, ...)
rowbinomCI(
  x,
  levels = NULL,
  by,
  by.levels = sort(unique(by)),
  na.rm = TRUE,
  weights = NULL,
  conf.level = 0.95,
  ...
)

Arguments

x

Usually a vector.

na.rm

Should NAs be removed?

...

Other arguments.

weights

A vector of weights.

conf.level

Numeric, denoting what confidence level to use for confidence intervals.

times

A vector of times to use for survival summaries.

levels

A vector of levels that character xs should have.

by

a vector of the by-values.

by.levels

a vector of the levels of by.

Value

Usually a vector of the appropriate numbers.

Details

Not all these functions are exported, in order to avoid conflicting NAMESPACES. Note also that the functions prefixed with "arsenal_" can be referred to by their short names (e.g., "min" for "arsenal_min").

See Also

includeNA, tableby.control