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asbio (version 1.6-3)

A Collection of Statistical Tools for Biologists

Description

Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

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Version

Install

install.packages('asbio')

Monthly Downloads

4,651

Version

1.6-3

License

GPL (>= 2)

Maintainer

Ken Aho

Last Published

February 26th, 2020

Functions in asbio (1.6-3)

Bayesian graphical summaries for discrete or categorical data.

Agrostis variabilis cover measurements

Anolis lizard contingency table data

May's effective specialization index

Baby walking times experimental data

Soil potassium analyses from 8 laboratories

Calculates kappa statistic and other classification error statistics

anm.samp.design

Animated demonstration of randomized sampling designs

CSIRO d13C-CO2 data from Rubino et al., A revised 1000 year atmospheric 13C-CO2 record from Law Dome and South Pole, Antarctica

Alpine soil temperature and moisture time series

Doornik-Hansen test for multivariate normality.

Bat forearm length as a function of bat age

Animation demonstrations of confidence intervals.

Animated depictions of Lotka-Volterra competition and exploitation models

Area under a receiver operating characteristic (ROC) curve

Asthma repeated measures dataset from Littell et al. (2002)

Animated plot of least squares function.

Pulldown menus for 'asbio' interactive graphical functions

A simple function for bootstrapping

Angle of azimuth to a boundary.

Animated plots of log-likelihood functions

Corn yield data

Bootstrap CI of M-estimators differences of two samples

Dataset of salary attributes for male and female workers from Ramsey and Schafer (1997)

Confidence interval for the product of two proportions

Chi plots for diagnosing multivariate independence.

Confidence intervals for ratios of proportions when the denominator is known

Contingency data for high school marijuana, alcohol, and cigarette use

crab gill and body weight data

Confidence interval for the median

Hamilton depression scores before and after drug treatment

Confidence interval for sigma squared.

Agresti-Pendergrast test

Facebook performance metrics for data mining and machine learning

Tree presence/absence data from Barro Colorado island

Fire data from Yellowstone National Park

Huber one step M-estimator

Maternal deer data

Barro Colorado Island Tree Counts

Brunner-Dette-Munk test

Kullback test for equal covariance matrices.

Mule deer telemetry data

Hodges-Lehman estimator of location

Visual illusions illustrating human perception errors.

Mack-Skillings test

R hat MCMC convergence statistic

Calculation and display of concordant and discordant pairs

Ipomopsis fruit yield data

Mountain goat data from Yellowstone National Park

Preston diversity analysis

Garment Latin square data from Littell et al. (2002)

Magnet pain relief data

Loess 2D and 3D smooth plots

Monte Carlo hypothesis testing for two samples.

Animated demonstration of frequentist binomial convergence of probability using a coin flip.

Conducts pairwise post hoc and planned comparisons associated with an ANOVA

Normal quantile plots for single or multiple factor levels

Calculates joint confidence intervals for parameters in linear models using a Bonferroni procedure.

Animated demonstration of density for a continuous pdf

Multiple pairwise comparison procedure to accompany a Friedman test.

Gibbs sampling of normal hierarchical models

Plots confidence intervals and/or bars with letters indicating significant differences for objects from class pairw

Biweight midvariance, and biweight midcorrelation.

Animated plot of the least squares function.

Bombus pollen data.

Creates plots for one way ANCOVAs

Aids and veterans dataset

Bone development data

Animation of Markov Chain Monte Carlo walks in bivariate normal space

Welch tests controlled for simultaneous inference

Modified Levene's test

Multiple pairwise comparison procedure to accompany a Kruskal-Wallis test

Confidence intervals for the ratio of binomial and multinomial proportions

Yellowstone NP cliff community data

Maximum likelihood algorithm for determining the binomial dispersal coefficient

alfalfa.split.plot

An agricultural split plot design

Esophageal cancer data modified slightly to create a balanced three-way factorial design

Simple functions for MCMC demonstrations

Caribou count data

Mahalanobis distance for two sites using a pooled covariance matrix

Visualize the sampling distribution of Pearson's product moment correlation

Dataset of mammal traits from Ramsey and Schaefer (1997)

Jackknife standard error from a set of pseudovalues

Plots a simple linear regression along with confidence and prediction intervals.

Anscombe's quartet

Visualize the Hardy Weinberg equilibrium

Polyamine data from Hollander and Wolfe (1999)

Concrete strength dataset for data mining

Visualization of the M-estimation function

Confidence interval estimation for the binomial parameter pi using five popular methods.

Percentage bend correlation

Huber M-estimator iterative least squares algorithm

CO2 exchange time series data

Interactive depiction of the ANOVA mechanism

PCBs and herring egg thickness

Australian frog calls following fire

Fly sex and longevity

Efficiency of a randomized block design compared to a CRD

Ant honeydew data

PM 2.5 pollutant data from Pocatello Idaho.

Conversion of binary digits to decimal numbers

Wood boring beetle data.

Huber M-estimator of location

selftest.se.tck1

Interactive self-testing questions

DEM data from the Starkey experimental forest in NE Oregon

Bivariate boxplots

Interactive smoother demonstrations

Functions for calculating alpha diversity.

Interactive depiction of type I and II error

see.cor.range.tck

Depict the effect of range on correlation

del14C in the atmosphere from 1700-1950

Visualize t-tests

Make plots of bivariate normal distributions

Species richness and environmental variables from Mt Washburn

Z and t confidence intervals for mu.

One sided confidence interval for mu.

Regression linear model derivation from linear algebra

Animated depiction of experimental designs

Spider web length data

Animated depictions of population growth

Power analysis for a one sample z-test

Animated depiction of six-sided die throws.

see.regression.tck

Demonstration of regression mechanics

Mosquito wing length data

Fisher's Rothamsted potato data

Rat glycogen data from Sokal and Rohlf (2012)

Unbalanced and balanced linear models

Interactive depiction of ROC curves

Depiction of the effect of random level selection on inferences concerning fixed effects

Bayesian linear models with uniform priors

Tippett cuckoo egg data

Agresti crabs dataset

Patient responses to myeloma drug treatments

One sample z-test

Matched pairs schizophrenia data

Refinery CO dataset

Bromus tectorum dataset

Grizzly bear litter sizes

Mammalian BMR and biomass data from Savage et al. (2004)

Interactive worksheet for logical and fallacious arguments

Enzymatic rate data for the phospholipase protein ExoU

Shading functions for interpretation of pdf probabilities.

Barplots with error bars (including interval plots)

American gizzard shad data

Environmental data for the community dataset cliff.sp

Visualize important non-linear functions

Chronic ailment counts for urban and rural women in Australia

Salsify height dataset

Transition matrix analysis

Bootstrap confidence intervals

Confidence intervals for stratified random samples.

Dissolved levels in locations above and below a town

Mouse life expectancy data

Whickham contingency table data for smokers and survivorship

Agricultural randomized block design

Agricultural factorial design

Heart rate data from Milliken and Johnson (2009)

Variance and standard error estimators for the sampling distribution of the sample mean

AIC, AICc, BIC, Mallow's Cp, and PRESS evaluation of linear models

exercise.repeated

Repeated measures data for an exercise experiment.

Florida state death penalty data

Nearest neighbor boundary coordinates

SO2 data for 32 US cities with respect to 6 explanatory variables

Likelihood ratio test for tabular data

Partial correlations of determination in multiple regression

Functions for customizing correlation matrices

Random draws from a scaled inverse chi-square distribution

Plant traits for 136 species

Veneer data from Littell et al. (2002)

prediction sum of squares

Scandinavian site by species community matrix

A multivariate normal dataset for data mining

Prostate cancer data

Nitrogen content of soils under pika haypiles

Visualize ANCOVA mechanics

see.accPrec.tck

Interactive depiction of precision and accuracy

One sample t-test

Fruit weight data from Littell et al. (2002)

Kaplan-Meier survivorship.

Creosote bush counts

Population levels in various countries from 1980-2006

Perpendicularity

Permutation test for two and three way factorial designs

Portneuf River longitudinal N and P data

Potash/cotton strength data

partial.resid.plot

Partial residual plots for interpretation of multiple regression.

Interactive depiction of type I and type II error and power

Mountain island biogeographic data

Datasets for resource use and availability

Animated representation of sampling distribution basics

Jacknife pseudo-values

GUI display of probability

Compilations of genus and species counts from Simberloff (1970)

Snoring and heart disease contingency data

Interactive visualization of least squares regression.

Sample skewness and kurtosis

Animated and/or snapshot representations of a statistic's sampling distribution

Robust one way trimmed means test.

see.exppower.tck

Visualize exponential power functions

ANOVA linear models

trim.ranef.test

Robust test for random factors using trimmed means.

see.rEffect.tck

Visualize random effects model

World CO2 levels, by country, from 1980 to 2006

Interactive depiction of the multinomial distribution

Tukey's test of additivity.

Wildebeest carcass categorical data

White wine quality data for data mining

Atmospheric carbon and D14C measurements

Glucose Levels Following Alcohol Ingestion

Split plot computer chip data from Littell et al. (2006)

Venn probability diagrams for an event with two outcomes

Fern environmental sex determination data