assignR (version 1.2.0)

unionP: Union probability of origin

Description

Probabilities that at least one individual came from each location in the assignment area (union of probabilities)

Usage

unionP(pdR)

Arguments

pdR

RasterStack or RasterBrick of probability density maps, e.g., as produced by calRaster. All layers must have common spatial extent and projection.

Examples

# NOT RUN {
# load North America boundary and global isoscape
data("naMap")
data("d2h_world")

# load hydrogen isotope data for human hair in North America
d = subOrigData(taxon = "Homo sapiens", 
  reference = "Ehleringer et al. 2008", mask = naMap)

# rescale from environmental isoscape to tissue isoscape
r = calRaster(known = d, isoscape = d2h_world, mask = naMap)

# four unknown-origin examples
id = c("A", "B", "C", "D")
d2H = c(-110, -90, -105, -102)
un = data.frame(id,d2H)

# assignment
asn = pdRaster(r, unknown = un, mask = naMap)

# probability that one or more individuals are from a given location
unionP(asn)
# }