hla.freqs


HLA haplotype frequencies for 21 pairs of HLA loci in a set of 300 controls
from a study of myopericarditis incidence following smallpox vaccination.


data

Computes asymmetric LD measures (ALD) for multi-allelic genetic data. These measures are identical to the correlation measure (r) for bi-allelic data.

Richard M Single

asymLD

Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic
Data

hla.freqs function

A data frame with 3063 observations on the following 5 variables.
 <dl>
<dt><code>haplo.freq</code></dt><dd>a numeric vector</dd> <dt><code>locus1</code></dt><dd>a character vector</dd> <dt><code>locus2</code></dt><dd>a character vector</dd> <dt><code>allele1</code></dt><dd>a character vector</dd> <dt><code>allele2</code></dt><dd>a character vector</dd> </dl>

Format

Wilson, C., 2010 Identifying polymorphisms associated with risk for the development of myopericarditis following smallpox vaccine. The Immunology Database and Analysis Portal (ImmPort), Study #26.

hla.freqs: Pairwise haplotype frequencies for 7 HLA loci

Description

Usage

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References