SynExpressionSet

SynExpressionSet-class

 This is a class representation for storing synexpression group information.	

classes

This package contains the functions to find the gene
expression modules that represent the drivers of Kauffman's
attractor landscape. The modules are the core attractor
pathways that discriminate between different cell types of
groups of interest. Each pathway has a set of synexpression
groups, which show transcriptionally-coordinated changes in
gene expression.

Samuel Zimmerman

attract

Methods to Find the Gene Expression Modules that Represent the
Drivers of Kauffman's Attractor Landscape

SynExpressionSet-class function

Objects are output by the function <code><a rd-options="" href="/link/findSynexprs?package=attract&version=1.24.0" data-mini-rdoc="attract::findSynexprs">findSynexprs</a></code>. 
	Objects can also be created by using <code>new("SynExpressionSet", ...)</code>.

Objects from the Class

<dl>
    <dt><code>groups</code>:</dt><dd>A <code>list</code> object denoting the probes or gene IDs (rnaseq) belonging to each synexpression group. </dd> <dt><code>profiles</code>:</dt><dd> A <code>matrix</code> of average expresson profiles for each synexpression group, each profile is stored as a row. </dd> </dl> 

Slots

No methods have yet been defined with class "SynExpressionSet" in the signature.

Methods

This is a class representation for storing synexpression group information.

SynExpressionSet-class: Class SynExpressionSet

Description

Arguments

Objects from the Class

Slots

Methods

Examples