autoReg (version 0.3.3)

residualPlot: Draw a residual plot with an object of class coxph

Description

Draw a residual plot with an object of class coxph

Usage

residualPlot(
  fit,
  type = "martingale",
  vars = NULL,
  ncol = 2,
  show.point = TRUE,
  se = TRUE,
  topn = 5,
  labelsize = 4
)

Value

A patchwork object

Arguments

fit

An object of class coxph or survreg

type

character One of the c("martingale","deviance","score","schoenfeld", "dfbeta","dfbetas","scaledsch","partial"). Default value is "martingale".

vars

character Names of variables to plot. default value is NULL

ncol

numeric number of columns

show.point

logical Whether or not show point

se

logical Whether or not show se

topn

numeric number of data to be labelled

labelsize

numeric size of label

Examples

require(survival)
data(cancer)
fit=coxph(Surv(time,status==2)~log(bili)+age+cluster(edema),data=pbc)
residualPlot(fit)
residualPlot(fit,vars="age")
fit=coxph(Surv(time,status==2)~age,data=pbc)
residualPlot(fit)
residualPlot(fit,"partial")
fit=coxph(Surv(time,status)~rx+sex+logWBC,data=anderson)
residualPlot(fit,ncol=3)
if (FALSE) {
data(pharmacoSmoking,package="asaur")
fit=coxph(Surv(ttr,relapse)~grp+employment+age,data=pharmacoSmoking)
residualPlot(fit)
residualPlot(fit,var="age")
residualPlot(fit,type="dfbeta")
residualPlot(fit,type="dfbeta",var="age")
residualPlot(fit,type="dfbeta",var="employment")
residualPlot(fit,type="dfbeta",var="employmentother")
pharmacoSmoking$ttr[pharmacoSmoking$ttr==0]=0.5
fit=survreg(Surv(ttr,relapse)~grp+age+employment,data=pharmacoSmoking,dist="weibull")
residualPlot(fit,type="response")
residualPlot(fit,type="deviance")
residualPlot(fit,type="dfbeta",vars="age")
fit=survreg(Surv(time,status)~ph.ecog+sex*age,data=lung,dist="weibull")
residualPlot(fit,"dfbeta")
residualPlot(fit,"deviance")
}