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autothresholdr (version 1.3.0)

An R Port of the 'ImageJ' Plugin 'Auto Threshold'

Description

Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See and Landini et al. (2017) .

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Install

install.packages('autothresholdr')

Monthly Downloads

1,147

Version

1.3.0

License

GPL-3

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Repository

https://www.github.com/rorynolan/autothresholdr

Maintainer

Rory Nolan

Last Published

November 5th, 2018

Functions in autothresholdr (1.3.0)

mean_stack_thresh

Threshold every image frame in an image stack based on their mean.

threshed_arr

Thresholded array class.

stack_threshed_img

Stack-thresholded image class.

Automatically found threshold class.

arr_mask

Array mask class.

auto_thresh

Automatically threshold an array of non-negative integers.

med_stack_thresh

Threshold every image frame in a stack based on their median.