autothresholdr v1.3.0

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An R Port of the 'ImageJ' Plugin 'Auto Threshold'

Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <http://imagej.net/Auto_Threshold> and Landini et al. (2017) <DOI:10.1111/jmi.12474>.

Functions in autothresholdr

Name Description
mean_stack_thresh Threshold every image frame in an image stack based on their mean.
threshed_arr Thresholded array class.
stack_threshed_img Stack-thresholded image class.
th Automatically found threshold class.
arr_mask Array mask class.
auto_thresh Automatically threshold an array of non-negative integers.
med_stack_thresh Threshold every image frame in a stack based on their median.
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Vignettes of autothresholdr

Name
finding-thresholds.Rmd
thresholding-image-stacks.Rmd
thresholding-images.Rmd
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Details

Type Package
License GPL-3
LazyData TRUE
SystemRequirements C++11
RoxygenNote 6.1.0
URL https://www.github.com/rorynolan/autothresholdr
BugReports https://www.github.com/rorynolan/autothresholdr/issues
VignetteBuilder knitr
LinkingTo Rcpp
Encoding UTF-8
NeedsCompilation yes
Packaged 2018-11-05 09:05:03 UTC; rnolan
Repository CRAN
Date/Publication 2018-11-05 09:30:02 UTC

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