avidaR (version 1.2.1)

get_genome_id_from_genome_seq: Get genome from genome sequence

Description

Get the genome of a digital organism from the linear string of letters representing the instruction codes that make up its genome.

Usage

get_genome_id_from_genome_seq(genome_seq, triplestore)

Value

Data frame. Columns: "genome_id" "genome_seq"

Arguments

genome_seq

String of letters or a list of strings

triplestore

Object of class triplestore_access which manages database access.

Examples

# Create triplestore object
avidaDB <- triplestore_access$new()

# Set access options
avidaDB$set_access_options(
  url = "https://graphdb.fortunalab.org",
  user = "public_avida",
  password = "public_avida",
  repository = "avidaDB_test"
)

# Get sequence for genome_1
sequence <- get_genome_seq_from_genome_id(
  genome_id = 1,
  triplestore = avidaDB
)$genome_seq[1]

# Get genome id from sequence
get_genome_id_from_genome_seq(
  genome_seq = sequence,
  triplestore = avidaDB
)