lans

<code>lans()</code> was replaced by <code>backbone_from_weighted(model = "lans")</code>.

internal

An implementation of methods for extracting a sparse unweighted network (i.e. a backbone)
from an unweighted network (e.g., Hamann et al., 2016 <doi:10.1007/s13278-016-0332-2>), a weighted network
(e.g., Serrano et al., 2009 <doi:10.1073/pnas.0808904106>), or a weighted projection (e.g., Neal et al., 2021
<doi:10.1038/s41598-021-03238-3>).

Zachary Neal

backbone

Extracts the Backbone from Networks

Rachel Domagalski

Bruce Sagan

Karl Godard

lans function

<dl><dt>W</dt>
<dd>A positively-weighted unipartite graph as a binary incidence matrix or a binary bipartite <a href="/link/igraph?package=backbone&version=3.0.3" data-mini-rdoc="backbone::igraph">igraph</a> object</dd>
<dt>alpha</dt>
<dd>real: significance level of hypothesis test(s)</dd>
<dt>missing.as.zero</dt>
<dd>boolean: should missing edges be treated as edges with zero weight and tested for significance</dd>
<dt>signed</dt>
<dd>boolean: TRUE for a signed backbone, FALSE for a binary backbone (see details)</dd>
<dt>mtc</dt>
<dd>string: type of Multiple Test Correction to be applied; can be any method allowed by <code><a href="/link/p.adjust()?package=backbone&version=3.0.3" data-mini-rdoc="backbone::p.adjust()">p.adjust()</a></code>.</dd>
<dt>narrative</dt>
<dd>boolean: TRUE if suggested text &amp; citations should be displayed.
#'</dd></dl>

Arguments

Depricated function to extract LANS backbone — lans

<dl>

<dt>W</dt>
<dd>A positively-weighted unipartite graph as a binary incidence matrix or a binary bipartite <a href='https://rdrr.io/pkg/igraph/man/aaa-igraph-package.html'>igraph</a> object</dd>


<dt>alpha</dt>
<dd>real: significance level of hypothesis test(s)</dd>


<dt>missing.as.zero</dt>
<dd>boolean: should missing edges be treated as edges with zero weight and tested for significance</dd>


<dt>signed</dt>
<dd>boolean: TRUE for a signed backbone, FALSE for a binary backbone (see details)</dd>


<dt>mtc</dt>
<dd>string: type of Multiple Test Correction to be applied; can be any method allowed by <code><a href='https://rdrr.io/r/stats/p.adjust.html'>p.adjust()</a></code>.</dd>


<dt>narrative</dt>
<dd>boolean: TRUE if suggested text &amp; citations should be displayed.
#'</dd>

</dl>

lans: Depricated function to extract LANS backbone

Description

Usage

Arguments

Details