clean_combine_subsites

In the Actual PERCH data set, a study site may have multiple subsites.
<code>clean_combine_subsites</code> combines all the study subjects from the same site.

Provides functions to specify, fit and visualize
nested partially-latent class models (
Wu, Deloria-Knoll, Hammitt, and Zeger (2016) <doi:10.1111/rssc.12101>;
Wu, Deloria-Knoll, and Zeger (2017) <doi:10.1093/biostatistics/kxw037>;
Wu and Chen (2021) <doi:10.1002/sim.8804>) for
inference of population disease etiology and individual diagnosis. In the motivating
Pneumonia Etiology Research for Child Health (PERCH) study, because both quantities
of interest sum to one hundred percent, the PERCH scientists frequently refer to
them as population etiology pie and individual etiology pie, hence the name of the package.

Zhenke Wu

baker

"Nested Partially Latent Class Models"

Scott Zeger

John Muschelli

Irena Chen

clean_combine_subsites function

<dl><dt>raw_meas_dir</dt>
<dd>The file path to the raw data file (.csv)</dd>
<dt>subsites_list</dt>
<dd>The list of subsite group names. Each group is a vector of
subsites to be combined</dd>
<dt>newsites_vec</dt>
<dd>A vector of new site names. It has the same length as
<code>"subsites_list"</code></dd></dl>

Arguments

Combine subsites in raw PERCH data set — clean_combine_subsites

<dl>

<dt>raw_meas_dir</dt>
<dd>The file path to the raw data file (.csv)</dd>


<dt>subsites_list</dt>
<dd>The list of subsite group names. Each group is a vector of
subsites to be combined</dd>


<dt>newsites_vec</dt>
<dd>A vector of new site names. It has the same length as
<code>"subsites_list"</code></dd>

</dl>

clean_combine_subsites: Combine subsites in raw PERCH data set

Description

Usage

Value

Arguments