plot_pie_panel

Provides functions to specify, fit and visualize
nested partially-latent class models (
Wu, Deloria-Knoll, Hammitt, and Zeger (2016) <doi:10.1111/rssc.12101>;
Wu, Deloria-Knoll, and Zeger (2017) <doi:10.1093/biostatistics/kxw037>;
Wu and Chen (2021) <doi:10.1002/sim.8804>) for
inference of population disease etiology and individual diagnosis. In the motivating
Pneumonia Etiology Research for Child Health (PERCH) study, because both quantities
of interest sum to one hundred percent, the PERCH scientists frequently refer to
them as population etiology pie and individual etiology pie, hence the name of the package.

Zhenke Wu

baker

"Nested Partially Latent Class Models"

Scott Zeger

John Muschelli

Irena Chen

plot_pie_panel function

<dl><dt>model_options</dt>
<dd>See <code>nplcm()</code></dd>
<dt>res_nplcm</dt>
<dd>See <code>nplcm_read_folder()</code></dd>
<dt>bugs.dat</dt>
<dd>Data input for the model fitting.</dd>
<dt>bg_color</dt>
<dd>A list with names "BrS", "SS", "pie" to specify background colors</dd>
<dt>select_latent</dt>
<dd>a vector of character strings representing latent status. It is used for
just plotting a subset of latent status. For example, you can specify <code>select_latent = "HINF"</code></dd>
<dt>exact</dt>
<dd>Default is <code>TRUE</code> to use <code>select_latent</code> as exact names of causes. If you want to
specify a name and plot all single or combo causes with that name, specify it to be <code>FALSE</code>.
to plot all latent status information relevant to <code>"HINF"</code>.</dd>
<dt>top_pie</dt>
<dd>Numerical value to specify the rightmost limit
on the horizontal axis for the pie panel.</dd>
<dt>label_size</dt>
<dd>the size of latent status labels on the right margin</dd>
<dt>ref_eti</dt>
<dd>reference quantiles and means; a list: pEti_ref_q, pEti_ref_mean_ord</dd>
<dt>is_plot</dt>
<dd>default to <code>TRUE</code> for plotting only; set to <code>FALSE</code> if to get summary.</dd></dl>

Arguments

Plot etiology (pie) panel — plot_pie_panel

<dl>

<dt>model_options</dt>
<dd>See <code>nplcm()</code></dd>


<dt>res_nplcm</dt>
<dd>See <code>nplcm_read_folder()</code></dd>


<dt>bugs.dat</dt>
<dd>Data input for the model fitting.</dd>


<dt>bg_color</dt>
<dd>A list with names "BrS", "SS", "pie" to specify background colors</dd>


<dt>select_latent</dt>
<dd>a vector of character strings representing latent status. It is used for
just plotting a subset of latent status. For example, you can specify <code>select_latent = "HINF"</code></dd>


<dt>exact</dt>
<dd>Default is <code>TRUE</code> to use <code>select_latent</code> as exact names of causes. If you want to
specify a name and plot all single or combo causes with that name, specify it to be <code>FALSE</code>.
to plot all latent status information relevant to <code>"HINF"</code>.</dd>


<dt>top_pie</dt>
<dd>Numerical value to specify the rightmost limit
on the horizontal axis for the pie panel.</dd>


<dt>label_size</dt>
<dd>the size of latent status labels on the right margin</dd>


<dt>ref_eti</dt>
<dd>reference quantiles and means; a list: pEti_ref_q, pEti_ref_mean_ord</dd>


<dt>is_plot</dt>
<dd>default to <code>TRUE</code> for plotting only; set to <code>FALSE</code> if to get summary.</dd>

</dl>

plot_pie_panel: Plot etiology (pie) panel

Description

Usage

Value

Arguments

See Also