write_model_Reg_Nest

<code>write_model_Reg_Nest</code> automatically generates model file according to
<code>model_options</code>; This is called within nplcm_fit_Reg_Nest.

Provides functions to specify, fit and visualize
nested partially-latent class models (
Wu, Deloria-Knoll, Hammitt, and Zeger (2016) <doi:10.1111/rssc.12101>;
Wu, Deloria-Knoll, and Zeger (2017) <doi:10.1093/biostatistics/kxw037>;
Wu and Chen (2021) <doi:10.1002/sim.8804>) for
inference of population disease etiology and individual diagnosis. In the motivating
Pneumonia Etiology Research for Child Health (PERCH) study, because both quantities
of interest sum to one hundred percent, the PERCH scientists frequently refer to
them as population etiology pie and individual etiology pie, hence the name of the package.

Zhenke Wu

baker

"Nested Partially Latent Class Models"

Scott Zeger

John Muschelli

Irena Chen

write_model_Reg_Nest function

<dl><dt>Mobs</dt>
<dd>Measurement data in the form of <code>data_nplcm</code></dd>
<dt>prior</dt>
<dd>Prior specification from <code>model_options</code></dd>
<dt>cause_list</dt>
<dd>A list of latent status names (crucial for building templates;
see <code>make_template()</code>)</dd>
<dt>Eti_formula</dt>
<dd>Etiology regression formula; Check <code>model_options$likelihood$Eti_formula</code>.</dd>
<dt>FPR_formula</dt>
<dd>A list of FPR regression formula; check
<code>model_options$likelihood$FPR_formula</code></dd>
<dt>use_measurements</dt>
<dd>"BrS", or "SS"</dd>
<dt>ppd</dt>
<dd>Default is NULL; set to TRUE for posterior predictive checking</dd>
<dt>use_jags</dt>
<dd>Default is FALSE; set to TRUE if want to use JAGS for model fitting.</dd></dl>

Arguments

Write .bug model file for regression model WITH nested subclasses — write_model_Reg_Nest

<dl>

<dt>Mobs</dt>
<dd>Measurement data in the form of <code>data_nplcm</code></dd>


<dt>prior</dt>
<dd>Prior specification from <code>model_options</code></dd>


<dt>cause_list</dt>
<dd>A list of latent status names (crucial for building templates;
see <code>make_template()</code>)</dd>


<dt>Eti_formula</dt>
<dd>Etiology regression formula; Check <code>model_options$likelihood$Eti_formula</code>.</dd>


<dt>FPR_formula</dt>
<dd>A list of FPR regression formula; check
<code>model_options$likelihood$FPR_formula</code></dd>


<dt>use_measurements</dt>
<dd>"BrS", or "SS"</dd>


<dt>ppd</dt>
<dd>Default is NULL; set to TRUE for posterior predictive checking</dd>


<dt>use_jags</dt>
<dd>Default is FALSE; set to TRUE if want to use JAGS for model fitting.</dd>

</dl>

write_model_Reg_Nest: Write `.bug` model file for regression model WITH nested subclasses

Description

Usage

Value

Arguments

See Also