gexpr

gexpr,ballgown-method


For objects created with Cufflinks/Tablemaker, gene-level measurements are 
  calculated by appropriately combining FPKMs from the transcripts comprising
  the gene. For objects created with RSEM, gene-level measurements are
  extracted directly from the RSEM output.


Tools for statistical analysis of assembled transcriptomes,
including flexible differential expression analysis, visualization of
transcript structures, and matching of assembled transcripts to annotation.

Alyssa Frazee

ballgown

Flexible, isoform-level differential expression analysis

gexpr function

For objects created with Cufflinks/Tablemaker, gene-level measurements are 
  calculated by appropriately combining FPKMs from the transcripts comprising
  the gene. For objects created with RSEM, gene-level measurements are
  extracted directly from the RSEM output.

gexpr: extract gene-level expression measurements from ballgown objects

Description

Usage

Arguments

Value

Examples