gexpr

0th

Percentile

extract gene-level expression measurements from ballgown objects

For objects created with Cufflinks/Tablemaker, gene-level measurements are calculated by appropriately combining FPKMs from the transcripts comprising the gene. For objects created with RSEM, gene-level measurements are extracted directly from the RSEM output.

Usage
gexpr(x)
"gexpr"(x)
Arguments
x
a ballgown object
Value

gene-by-sample matrix containing per-sample gene measurements.

Aliases
  • gexpr
  • gexpr,ballgown-method
Examples
data(bg)
gene_matrix = gexpr(bg)
Documentation reproduced from package ballgown, version 2.4.2, License: Artistic-2.0

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