ballgown (version 2.4.2)

iexpr: extract transcript-level expression measurements from ballgown objects

Description

extract transcript-level expression measurements from ballgown objects

Usage

iexpr(x, meas = "rcount")
"iexpr"(x, meas = "rcount")

Arguments

x

a ballgown object

meas

type of measurement to extract. Can be "rcount", "ucount", "mrcount", or "all". Default "rcount".

Value

intron-by-sample matrix containing the number of reads (measured as specified by meas) supporting each intron, in each sample. If meas is "all", a data frame is returned, containing all measurements and location information.

Examples

data(bg)
intron_rcount_matrix = iexpr(bg)
intron_data_frame = iexpr(bg, 'all')