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bamlss (version 1.0-1)

Bayesian Additive Models for Location Scale and Shape (and Beyond)

Description

Infrastructure for estimating probabilistic distributional regression models in a Bayesian framework. The distribution parameters may capture location, scale, shape, etc. and every parameter may depend on complex additive terms (fixed, random, smooth, spatial, etc.) similar to a generalized additive model. The conceptual and computational framework is introduced in Umlauf, Klein, Zeileis (2017) .

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Version

Install

install.packages('bamlss')

Monthly Downloads

1,132

Version

1.0-1

License

GPL-2 | GPL-3

Maintainer

Nikolaus Umlauf

Last Published

October 12th, 2018

Functions in bamlss (1.0-1)

bboost

Bootstrap Boosting
smooth.construct.kr.smooth.spec

Kriging Smooth Constructor
bamlss-package

Bayesian Additive Models for Location Scale and Shape (and Beyond)
plot.bamlss

Plotting BAMLSS
la

Lasso Smooth Constructor
bfit

Fit BAMLSS with Backfitting
bamlss

Fit Bayesian Additive Models for Location Scale and Shape (and Beyond)
coef.bamlss

Extract BAMLSS Coefficients
plot2d

Plot 2D Effects
colorlegend

Plot a Color Legend
boost

Boosting BAMLSS
dl.bamlss

Deep Learning BAMLSS
family.bamlss

Distribution Families in bamlss
rmf

Remove Special Characters
c95

Compute 95% Credible Interval and Mean
continue

Continue Sampling
JAGS

Markov Chain Monte Carlo for BAMLSS using JAGS
bamlss.engine.helpers

BAMLSS Engine Helper Functions
model.matrix.bamlss.frame

Construct/Extract BAMLSS Design Matrices
bamlss.engine.setup

BAMLSS Engine Setup Function
s2

Special Smooths in BAMLSS Formulae
fitted.bamlss

BAMLSS Fitted Values
n

Neural Networks for BAMLSS
gF

Get a BAMLSS Family
bamlss.formula

Formulae for BAMLSS
cox.mcmc

Cox Model Markov Chain Monte Carlo
scale2

Scaling Vectors and Matrices
boost2

Some Shortcuts
bamlss.frame

Create a Model Frame for BAMLSS
cox.mode

Cox Model Posterior Mode Estimation
homstart_data

HOMSTART Precipitation Data
lin

Linear Effects for BAMLSS
plotmap

Plot Maps
jm_bamlss

Fit Flexible Additive Joint Models
predict.bamlss

BAMLSS Prediction
model.frame.bamlss

BAMLSS Model Frame
residuals.bamlss

Compute BAMLSS Residuals
results.bamlss.default

Compute BAMLSS Results for Plotting and Summaries
samples

Extract Samples
samplestats

Sampling Statistics
cox.predict

Cox Model Prediction
terms.bamlss

BAMLSS Model Terms
neighbormatrix

Compute a Neighborhood Matrix from Spatial Polygons
plot3d

Plot 3D Effects
plotblock

Factor Variable and Random Effects Plots
simJM

Simulate longitudinal and survival data for joint models
simSurv

Simulate Survival Times
summary.bamlss

Summary for BAMLSS
sliceplot

Plot Slices of Bivariate Functions
parameters

Extract or Initialize Parameters for BAMLSS
surv.transform

Survival Model Transformer Function
smooth.construct

Constructor Functions for Smooth Terms in BAMLSS
randomize

Transform Smooth Constructs to Random Effects
rb

Random Bits for BAMLSS
smooth.construct.sr.smooth.spec

Random Effects P-Spline
stabsel

Stability selection.
LondonFire

London Fire Data
MVNORM

Create Samples for BAMLSS by Multivariate Normal Approximation
GMCMC

General Markov Chain Monte Carlo for BAMLSS
Austria

Austria States and Topography
DIC

Deviance Information Criterion
GAMart

GAM Artificial Data Set
BayesX

Markov Chain Monte Carlo for BAMLSS using BayesX
Surv2

Create a Survival Object for Joint Models
Volcano

Artificial Data Set based on Auckland's Maunga Whau Volcano