bamsignals

bamsignals-package


Functions and classes for extracting signals from a bam file. Differently 
than the other packages, this package is not supposed to import reads in R.
All the read-processing is done in C/C++ and the only output are read counts.


This package allows to efficiently obtain count vectors
from indexed bam files. It counts the number of reads in given
genomic ranges and it computes reads profiles and coverage
profiles. It also handles paired-end data.

Alessandro Mammana

Extract read count signals from bam files

bamsignals function

Functions and classes for extracting signals from a bam file. Differently 
than the other packages, this package is not supposed to import reads in R.
All the read-processing is done in C/C++ and the only output are read counts.

bamsignals: Efficient counting of reads in a bam file

Description

Arguments

See Also