calculate_adequacy

This function calculates adequacy of each biopsy (i.e., each observation)
based on glomeruli and arteries variables (if provided).

Assigns standardized diagnoses using the Banff Classification
(Category 1 to 6 diagnoses, including Acute and Chronic active T-cell
mediated rejection as well as Active, Chronic active, and Chronic antibody
mediated rejection). The main function considers a minimal dataset
containing biopsies information in a specific format (described by a data
dictionary), verifies its content and format (based on the data dictionary),
assigns diagnoses, and creates a summary report. The package is developed on
the reference guide to the Banff classification of renal allograft pathology
Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>.
The full description of the Banff classification is available at <https://banfffoundation.org/>.

Guillaume Fabre

banffIT

Automated Standardized Assignment of the Banff Classification

Ruth Sapir-Pichhadze

Jan Ulrich Becker

Samuel El Bouzaïdi Tiali

Jérôme Laforme

Tina Wey

Edden Gitelman

calculate_adequacy function

<dl><dt>banff_dataset</dt>
<dd>A tibble object.</dd></dl>

Arguments

Calculate adequacy of each biopsy from glomeruli and arteries variables — calculate_adequacy

<dl>

<dt>banff_dataset</dt>
<dd>A tibble object.</dd>

</dl>

calculate_adequacy: Calculate adequacy of each biopsy from glomeruli and arteries variables

Description

Usage

Value

Arguments

Examples