get_banff_dictionary

This function gets the data dictionary used to control the consistency of
the input dataset.

Assigns standardized diagnoses using the Banff Classification
(Category 1 to 6 diagnoses, including Acute and Chronic active T-cell
mediated rejection as well as Active, Chronic active, and Chronic antibody
mediated rejection). The main function considers a minimal dataset
containing biopsies information in a specific format (described by a data
dictionary), verifies its content and format (based on the data dictionary),
assigns diagnoses, and creates a summary report. The package is developed on
the reference guide to the Banff classification of renal allograft pathology
Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>.
The full description of the Banff classification is available at <https://banfffoundation.org/>.

Guillaume Fabre

banffIT

Automated Standardized Assignment of the Banff Classification

Ruth Sapir-Pichhadze

Jan Ulrich Becker

Samuel El Bouzaïdi Tiali

Jérôme Laforme

Tina Wey

Edden Gitelman

get_banff_dictionary function

<dl><dt>version</dt>
<dd>A character string referring the version of Banff classification.
The most recent classification is the default.
Options are "2022" (default), "2017".</dd>
<dt>which</dt>
<dd>Indicates which variables to get from the Banff data dictionary.
If NULL both input and output variables are provided.*</dd>
<dt>language</dt>
<dd>Optional input allowing the user to get the diagnoses in a
specific language. Options are "label:en" (default), "label:fr", "label:de",
"label:sp", "label:nl", "label:jp", "label:in".</dd>
<dt>detail</dt>
<dd>Optional argument indicating whether the data dictionary should
include temporary variables generated in the process or not.
FALSE by default.</dd></dl>

Arguments

Get the Banff data dictionary — get_banff_dictionary

<dl>

<dt>version</dt>
<dd>A character string referring the version of Banff classification.
The most recent classification is the default.
Options are "2022" (default), "2017".</dd>


<dt>which</dt>
<dd>Indicates which variables to get from the Banff data dictionary.
If NULL both input and output variables are provided.*</dd>


<dt>language</dt>
<dd>Optional input allowing the user to get the diagnoses in a
specific language. Options are "label:en" (default), "label:fr", "label:de",
"label:sp", "label:nl", "label:jp", "label:in".</dd>


<dt>detail</dt>
<dd>Optional argument indicating whether the data dictionary should
include temporary variables generated in the process or not.
FALSE by default.</dd>

</dl>

get_banff_dictionary: Get the Banff data dictionary

Description

Usage

Value

Arguments

Examples