model.chapy.apply

This page describes the usage of CHAPY with <code>phenology()</code>.
The model specific inputs are listed and its basic functionality is explained.
CHAPY was published by Ogris2020;textualbarrks and
parametrized for Pityogenes chalcographus in Slovenia.

Calculate the bark beetle phenology based on raster data or
point-related data. There are multiple models implemented for two bark
beetle species. The models can be customized and their submodels (onset of
infestation, beetle development, diapause initiation, mortality) can be
combined. The following models are available in the package:
PHENIPS-Clim (first-time release in this package),
PHENIPS (Baier et al. 2007) <doi:10.1016/j.foreco.2007.05.020>,
RITY (Ogris et al. 2019) <doi:10.1016/j.ecolmodel.2019.108775>,
CHAPY (Ogris et al. 2020) <doi:10.1016/j.ecolmodel.2020.109137>,
BSO (Jakoby et al. 2019) <doi:10.1111/gcb.14766>,
Lange et al. (2008) <doi:10.1007/978-3-540-85081-6_32>,
Jönsson et al. (2011) <doi:10.1007/s10584-011-0038-4>.
The package may be expanded by models for other bark beetle species in the
future.

Jakob Jentschke

barrks

Calculate Bark Beetle Phenology Using Different Models

FVA BW, Abt. Waldschutz 

model.chapy.apply function

<dl><dt>tmin, tmean, tmax</dt>
<dd>Daily minimum/mean/maximum air temperatures in °C.
For the <code>development</code> submodel, the parameter that is obligatory depends on
<code>mode</code>.</dd>
<dt>daylength</dt>
<dd>Length of the day in hours. Can be created with
<code>create_daylength_rst()</code> or <code>create_daylength_rst()</code>.</dd>
<dt>mode</dt>
<dd>Specifies which temperature should be used to calculate the
development. Can be <code>min</code>, <code>mean</code> or <code>max</code>.</dd>
<dt>.submodels, .onset, .diapause, .mortality, ...</dt>
<dd>See <code>phenology()</code> for a detailled description of the function.</dd></dl>

Arguments

The functioning of CHAPY is identical to RITY but it is
has a different parametrization.

Functioning

Use CHAPY — model.chapy.apply

<dl>

<dt>tmin, tmean, tmax</dt>
<dd>Daily minimum/mean/maximum air temperatures in °C.
For the <code>development</code> submodel, the parameter that is obligatory depends on
<code>mode</code>.</dd>


<dt>daylength</dt>
<dd>Length of the day in hours. Can be created with
<code>create_daylength_rst()</code> or <code>create_daylength_rst()</code>.</dd>


<dt>mode</dt>
<dd>Specifies which temperature should be used to calculate the
development. Can be <code>min</code>, <code>mean</code> or <code>max</code>.</dd>


<dt>.submodels, .onset, .diapause, .mortality, ...</dt>
<dd>See <code>phenology()</code> for a detailled description of the function.</dd>

</dl>

The functioning of CHAPY is identical to RITY but it is
has a different parametrization.

model.chapy.apply: Use CHAPY

Description

Arguments

Functioning

Details

References

See Also