system2

From base v3.3 by R-core R-core@R-project.org

Invoke a System Command

system2 invokes the OS command specified by command.

Keywords: utilities, file, interface

Usage

system2(command, args = character(),
        stdout = "", stderr = "", stdin = "", input = NULL,
        env = character(), wait = TRUE,
        minimized = FALSE, invisible = TRUE)

Arguments

command: the system command to be invoked, as a character string.
args: a character vector of arguments to command.
stdout, stderr: where output to ‘stdout’ or ‘stderr’ should be sent. Possible values are "", to the R console (the default), NULL or FALSE (discard output), TRUE (capture the output in a character vector) or a character string naming a file.
stdin: should input be diverted? "" means the default, alternatively a character string naming a file. Ignored if input is supplied.
input: if a character vector is supplied, this is copied one string per line to a temporary file, and the standard input of command is redirected to the file.
env: character vector of name=value strings to set environment variables.
wait: a logical (not NA) indicating whether the R interpreter should wait for the command to finish, or run it asynchronously. This will be ignored (and the interpreter will always wait) if stdout = TRUE.

Details

Unlike system, command is always quoted by shQuote, so it must be a single command without arguments.

For details of how command is found see system.

On Windows, env is only supported for commands such as R and make which accept environment variables on their command line.

Some Unix commands (such as some implementations of ls) change their output if they consider it to be piped or redirected: stdout = TRUE uses a pipe whereas stdout = "some_file_name" uses redirection.

Because of the way it is implemented, on a Unix-alike stderr = TRUE implies stdout = TRUE: a warning is given if this is not what was specified.

Value

If stdout = TRUE or stderr = TRUE, a character vector giving the output of the command, one line per character string. (Output lines of more than 8095 bytes will be split.) If the command could not be run an Rerror is generated. If command runs but gives a non-zero exit status this will be reported with a warning and in the attribute "status" of the result: an attribute "errmsg" may also be available.
In other cases, the return value is an error code (0 for success), given the invisible attribute (so needs to be printed explicitly). If the command could not be run for any reason, the value is 127. Otherwise if wait = TRUE the value is the exit status returned by the command, and if wait = FALSE it is 0 (the conventional success value). #ifdef windows Some Windows commands return out-of-range status values (e.g., -1) and so only the bottom 16 bits of the value are used. #endif

Note

system2 is a more portable and flexible interface than system, introduced in R2.12.0. It allows redirection of output without needing to invoke a shell on Windows, a portable way to set environment variables for the execution of command, and finer control over the redirection of stdout and stderr. Conversely, system (and shell on Windows) allows the invocation of arbitrary command lines.

There is no guarantee that if stdout and stderr are both TRUE or the same file that the two streams will be interleaved in order. This depends on both the buffering used by the command and the OS.

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