basecamb (version 1.1.2)

or_model_summary: Summarise a logistic regression model on the odds ratio scale

Description

This function summarises regression models that return data on the log-odds scale and returns a dataframe with estimates, and confidence intervals as odds ratios. P value are also provided. Additionally, intercepts can be removed from the summary. This comes in handy when ordinal logistic regression models are fit. Ordinal regression models (such as proportional odds models) usually result in many intercepts that are not really of interest. This function is also compatible with models obtained from multiply imputed datasets, for example models fitted with Hmisc::fit.mult.impute().

Usage

or_model_summary(
  model,
  conf_int = 1.96,
  print_intercept = FALSE,
  round_est = 3,
  round_p = 4
)

Value

a dataframe with the adjusted odds ratio, confidence intervals and p-values.

Arguments

model

a model object with estimates on the log-odds scale.

conf_int

a numeric used to calculate the confidence intervals. The default of 1.96 gives the 95% confidence interval.

print_intercept

a logical flag indicating whether intercepts shall be removed. All variables that start with "y>=" will be removed. If there is a variable matching this pattern, it will also be removed!

round_est

the number of decimals returned for estimates (odds ratios) and confidence intervals.

round_p

the number of decimals provided for p-values.

Author

Till D. Best

Details

CAVE! The function does not check whether your estimates are on the log-odds scale. It will do the transformation no matter what!

Examples

# fit a logistic model
mod <- glm(formula = am ~ mpg + cyl, data = mtcars, family = binomial())

or_model_summary(model = mod)