baseq

Basic Sequence Processing Tool for Biological Data

Developed by Ambu Vijayan and Dr. J. Sreekumar

Version 0.1.2

Commands :

Preprocessing :

• clean_sequence()

• clean_DNA_sequence()

• clean_RNA_sequence()

• clean_DNA_file()

• clean_RNA_file()

• count_bases()

• count_seq_pattern()

• gc_content()

• gc_content_file()

From DNA :

• dna_to_protein()

• dna_to_rna()

• reverse_complement()

From RNA :

• rna_reverse_complement()

• rna_to_dna()

• rna_to_protein()

Readers :

• read_fasta()

• read.fasta_to_df()

• read.fasta_to_list()

• read.fastq_to_list()

Writers :

• write.dna_to_rna()

• write.rna_to_dna()

• write.df_to_fasta()

• write.df_to_fastq()

• write.list_to_fasta()

• write.list_to_fastq()

Converters :

• fastq_to_fasta()

Commands are explained below

CRAN REPO for version 0.1.0 : baseq: Basic Sequence Processing Tool for Biological Data

GitHub REPO for version 0.1.0 : baseq: Basic Sequence Processing Tool for Biological Data

Authors : Ambu Vijayan Young Professional, ICAR - Central Tuber Crops Research Institute

Dr. J. Sreekumar Principal Scientist, ICAR - Central Tuber Crops Research Institute

Maintainer : Ambu Vijayan