filter_fastq_quality

Filters FASTQ reads based on average quality score.

Primarily created as an easy and understanding way to do basic sequences surrounding the central dogma of molecular biology.

Ambu Vijayan

baseq

Basic Sequence Processing Tool for Biological Data

filter_fastq_quality function

<dl><dt>input_file</dt>
<dd>Path to input FASTQ</dd>
<dt>output_file</dt>
<dd>Path to output FASTQ</dd>
<dt>min_avg_quality</dt>
<dd>Minimum average Phred score (default: 20)</dd>
<dt>phred_offset</dt>
<dd>Phred offset (default: 33)</dd></dl>

Arguments

Quality Filter FASTQ — filter_fastq_quality

<dl>

<dt>input_file</dt>
<dd>Path to input FASTQ</dd>


<dt>output_file</dt>
<dd>Path to output FASTQ</dd>


<dt>min_avg_quality</dt>
<dd>Minimum average Phred score (default: 20)</dd>


<dt>phred_offset</dt>
<dd>Phred offset (default: 33)</dd>

</dl>

filter_fastq_quality: Quality Filter FASTQ

Description

Usage

Arguments