snps

Simulated Single Polymorphism Nucleotide (SNP) dataset
  containing $n=100$ observations of $p=500$ predictors (SNPs, 1=Homozygote1, 0=Heterozygote, -1=Homozygote2) and a one-dimensional response (1=case, 0=control). The dataset is generated using GWAsimulator.

datasets

Big data statistical analysis for high-dimensional models is made possible by modifying lasso.proj() in 'hdi' package by replacing its nodewise-regression with sparse precision matrix computation using 'BigQUIC'.

Ehsan Ullah

bastah

Big Data Statistical Analysis for High-Dimensional Models

snps function

<dl>
    <dt>y</dt><dd>Phenotype (1=case, 0=control) of 100 individuals.</dd> <dt>x</dt><dd>SNP genotype data (SNPs, 1=Homozygote1, 0=Heterozygote, -1=Homozygote2) of 500 simulated SNPs.</dd> </dl> 

snps: SNP data set

Description

Usage

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References