cfKillJob

[<code><a rd-options="" href="/link/Registry?package=batchtools&version=0.9.10" data-mini-rdoc="batchtools::Registry">Registry</a></code>]
Registry. If not explicitly passed, uses the default registry (see <code><a rd-options="" href="/link/setDefaultRegistry?package=batchtools&version=0.9.10" data-mini-rdoc="batchtools::setDefaultRegistry">setDefaultRegistry</a></code>).

[<code>character(1)</code>]
OS command, e.g. &#8220;qdel&#8221;.

[<code>character</code>]
Arguments to <code>cmd</code>, including the batch id.

args

[<code>integer(1)</code>]
Number of total times to try execute the OS command in cases of failures.
Default is <code>3</code>.

max.tries

[<code>character(1)</code>]
Name of the SSH node to run the command on. If set to &#8220;localhost&#8221; (default), the command
is not piped through SSH.

nodename

This function is only intended for use in your own cluster functions implementation.
Calls the OS command to kill a job via <code><a rd-options="base" href="/link/system?package=batchtools&version=0.9.10&to=base" data-mini-rdoc="base::system">system</a></code> like this: &#8220;cmd batch.job.id&#8221;. If the
command returns an exit code &gt; 0, the command is repeated after a 1 second sleep
<code>max.tries-1</code> times. If the command failed in all tries, an error is generated.

As a successor of the packages 'BatchJobs' and 'BatchExperiments',
this package provides a parallel implementation of the Map function for high
performance computing systems managed by schedulers 'IBM Spectrum LSF'
(<http://www-03.ibm.com/systems/spectrum-computing/products/lsf/>),
'OpenLava' (<http://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid
Engine' (<http://www.univa.com/>), 'Slurm' (<http://slurm.schedmd.com/>),
'TORQUE/PBS'
(<http://www.adaptivecomputing.com/products/open-source/torque/>), or
'Docker Swarm' (<https://docs.docker.com/swarm/>).
A multicore and socket mode allow the parallelization on a local machines,
and multiple machines can be hooked up via SSH to create a makeshift
cluster. Moreover, the package provides an abstraction mechanism to define
large-scale computer experiments in a well-organized and reproducible way.

Michel Lang

batchtools

Tools for Computation on Batch Systems

Bernd Bischl

Dirk Surmann

cfKillJob function

[<code><a rd-options='' href='Registry'>Registry</a></code>]
Registry. If not explicitly passed, uses the default registry (see <code><a rd-options='' href='setDefaultRegistry'>setDefaultRegistry</a></code>).

This function is only intended for use in your own cluster functions implementation.
Calls the OS command to kill a job via <code><a rd-options='base' href='system'>system</a></code> like this: &#8220;cmd batch.job.id&#8221;. If the
command returns an exit code &gt; 0, the command is repeated after a 1 second sleep
<code>max.tries-1</code> times. If the command failed in all tries, an error is generated.

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cfKillJob: Cluster Functions Helper to Kill Batch Jobs

Description

Usage

Arguments

Value

See Also