mig.partraces.plot: Plotting MCMC Parameter Traces

Description

Functions for plotting the MCMC parameter traces from the migration model.

Usage

mig.partraces.plot(
  mcmc.list = NULL,
  sim.dir = NULL,
  chain.ids = NULL,
  par.names = mig.parameter.names(),
  nr.points = NULL,
  dev.ncol = 2,
  ...
)
mig.partraces.cs.plot(
  country,
  mcmc.list = NULL,
  sim.dir = NULL,
  chain.ids = NULL,
  par.names = mig.parameter.names.cs(),
  nr.points = NULL,
  dev.ncol = 3,
  ...
)

Value

No return value.

Arguments

mcmc.list: List of bayesMig.mcmc objects, or an object of class bayesMig.mcmc.set or of class bayesMig.prediction. If it is NULL, the traces are loaded from sim.dir.
sim.dir: Directory with the MCMC simulation results. It is only used if mcmc.list is NULL.
chain.ids: List of MCMC identifiers to be plotted. If it is NULL, all chains found in mcmc.list or sim.dir are plotted.
par.names: Names of parameters for which traces should be plotted. By default all country-independent parameters are plotted if used within mig.partraces.plot, or country-specific parameters are plotted if used within mig.partraces.cs.plot.
nr.points: Number of points to be plotted. If NULL, all points are plotted, otherwise the traces are thinned evenly.
dev.ncol: Number of column for the graphics device. If the number of parameters is smaller than dev.ncol, the number of columns is automatically decreased.
...: Additional graphical parameters.
country: Name or numerical code of a country. It can also be given as ISO-2 or ISO-3 characters.

Details

The functions plot MCMC traces either for country-independent parameters (mig.partraces.plot or for country-specific parameters (mig.partraces.cs.plot, one graph per parameter. One can restrict it to specific chains by setting the chain.ids argument, and to specific parameters by setting the par.names argument.