bayesTFR (version 2.1-0)

tfr.partraces.plot: Plotting MCMC Parameter Traces

Description

Functions for plotting the MCMC parameter traces.

Usage

tfr.partraces.plot(mcmc.list = NULL, 
    sim.dir = file.path(getwd(), "bayesTFR.output"), chain.ids = NULL, 
    par.names = tfr.parameter.names(trans = TRUE), 
    nr.points = NULL, dev.ncol=5, low.memory = TRUE, ...)
	
tfr.partraces.cs.plot(country, mcmc.list = NULL, 
    sim.dir = file.path(getwd(), "bayesTFR.output"), chain.ids = NULL, 
    par.names = tfr.parameter.names.cs(trans = TRUE), 
    nr.points = NULL, dev.ncol=3, low.memory = TRUE, ...)

Rdversion

1.1

Details

The functions plot MCMC traces either for country-independent parameters (tfr.partraces.plot) or for country-specific parameters (tfr.partraces.cs.plot), one graph per parameter. One can restrict it to specific chains by setting the chain.ids argument, and to specific parameters by setting the par.names argument.

See Also

coda.list.mcmc for retrieving the raw values of traces.

Examples

sim.dir <- file.path(.find.package("bayesTFR"), "ex-data", "bayesTFR.output")
tfr.partraces.plot(sim.dir=sim.dir)
tfr.partraces.cs.plot(country="Netherlands", sim.dir=sim.dir)