tfr.partraces.plot: Plotting MCMC Parameter Traces

Description

Functions for plotting the MCMC parameter traces.

Usage

tfr.partraces.plot(mcmc.list = NULL, 
    sim.dir = file.path(getwd(), "bayesTFR.output"), chain.ids = NULL, 
    par.names = tfr.parameter.names(trans = TRUE), 
    nr.points = NULL, dev.ncol=5, low.memory = TRUE, ...)
	
tfr.partraces.cs.plot(country, mcmc.list = NULL, 
    sim.dir = file.path(getwd(), "bayesTFR.output"), chain.ids = NULL, 
    par.names = tfr.parameter.names.cs(trans = TRUE), 
    nr.points = NULL, dev.ncol=3, low.memory = TRUE, ...)
    
tfr3.partraces.plot(mcmc.list = NULL, 
    sim.dir = file.path(getwd(), "bayesTFR.output"), chain.ids = NULL, 
    par.names = tfr3.parameter.names(), 
    nr.points = NULL, dev.ncol=3, low.memory = TRUE, ...)
	
tfr3.partraces.cs.plot(country, mcmc.list = NULL, 
    sim.dir = file.path(getwd(), "bayesTFR.output"), chain.ids = NULL, 
    par.names = tfr3.parameter.names.cs(), 
    nr.points = NULL, dev.ncol=2, low.memory = TRUE, ...)

Arguments

Rdversion

1.1

Details

The functions plot MCMC traces either for country-independent parameters (tfr.partraces.plot for phase II MCMCs and tfr3.partraces.plot for phase III MCMCs) or for country-specific parameters (tfr.partraces.cs.plot for phase II MCMCs and tfr3.partraces.cs.plot for phase III MCMCs), one graph per parameter. One can restrict it to specific chains by setting the chain.ids argument, and to specific parameters by setting the par.names argument.

Examples

Run this code

sim.dir <- file.path(find.package("bayesTFR"), "ex-data", "bayesTFR.output")
tfr.partraces.plot(sim.dir=sim.dir)
tfr.partraces.cs.plot(country="Netherlands", sim.dir=sim.dir)