bayesplot v1.7.2

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Plotting for Bayesian Models

Plotting functions for posterior analysis, MCMC diagnostics, prior and posterior predictive checks, and other visualizations to support the applied Bayesian workflow advocated in Gabry, Simpson, Vehtari, Betancourt, and Gelman (2019) <doi:10.1111/rssa.12378>. The package is designed not only to provide convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling, particularly (but not exclusively) packages interfacing with 'Stan'.

Functions in bayesplot

Name Description
MCMC-scatterplots Scatterplots of MCMC draws
MCMC-combos Combination plots
MCMC-overview Plots for Markov chain Monte Carlo simulations
MCMC-nuts Diagnostic plots for the No-U-Turn-Sampler (NUTS)
MCMC-recover Compare MCMC estimates to "true" parameter values
MCMC-diagnostics General MCMC diagnostics
MCMC-distributions Histograms and kernel density plots of MCMC draws
MCMC-parcoord Parallel coordinates plot of MCMC draws
MCMC-intervals Plot interval estimates from MCMC draws
MCMC-traces Trace plots of MCMC draws
PPC-errors PPC errors
PPC-intervals PPC intervals
bayesplot-colors Set, get, or view bayesplot color schemes
available_ppc Get or view the names of available plotting functions
PPC-overview Graphical posterior predictive checking
PPC-loo LOO predictive checks
example-data Example draws to use in demonstrations and tests
bayesplot_theme_get Get, set, and modify the active bayesplot theme
pp_check Posterior (or prior) predictive checks (S3 generic and default method)
PPC-scatterplots PPC scatterplots
PPC-test-statistics PPC test statistics
reexports Objects exported from other packages
bayesplot-package bayesplot: Plotting for Bayesian Models
bayesplot_grid Arrange plots in a grid
bayesplot-extractors Extract quantities needed for plotting from model objects
PPC-distributions PPC distributions
PPC-discrete PPCs for discrete outcomes
bayesplot-helpers Convenience functions for adding or changing plot details
theme_default Default bayesplot plotting theme
tidy-params Tidy parameter selection
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Vignettes of bayesplot

Name
children/SETTINGS-knitr.txt
graphical-ppcs.Rmd
plotting-mcmc-draws.Rmd
visual-mcmc-diagnostics.Rmd
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Details

Type Package
Date 2020-05-27
License GPL (>= 3)
LazyData TRUE
URL https://mc-stan.org/bayesplot
BugReports https://github.com/stan-dev/bayesplot/issues/
SystemRequirements pandoc (>= 1.12.3), pandoc-citeproc
RoxygenNote 7.1.0
VignetteBuilder knitr
Encoding UTF-8
NeedsCompilation no
Packaged 2020-05-27 21:42:08 UTC; jgabry
Repository CRAN
Date/Publication 2020-05-28 05:20:07 UTC

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