bayou2OUwie

<code>bayou2OUwie</code> Converts a bayou formatted parameter list into OUwie formatted tree and data table that can be analyzed in OUwie

Fits and simulates multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using
Bayesian reversible-jump methods. See Uyeda and Harmon (2014) <DOI:10.1093/sysbio/syu057>.

Josef Uyeda

bayou

Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Josef C. Uyeda

Jon Eastman

Luke Harmon

Abhishek Hari

bayou2OUwie function

<dl><dt>pars</dt>
<dd>A list with parameter values specifying <code>sb</code> = the branches with shifts,
<code>loc</code> = the location on branches where a shift occurs and <code>t2</code> = the optima to which
descendants of that shift inherit</dd>
<dt>tree</dt>
<dd>A phylogenetic tree</dd>
<dt>dat</dt>
<dd>A vector of tip states</dd></dl>

Arguments

Converts bayou data into OUwie format — bayou2OUwie

<dl>

<dt>pars</dt>
<dd>A list with parameter values specifying <code>sb</code> = the branches with shifts,
<code>loc</code> = the location on branches where a shift occurs and <code>t2</code> = the optima to which
descendants of that shift inherit</dd>


<dt>tree</dt>
<dd>A phylogenetic tree</dd>


<dt>dat</dt>
<dd>A vector of tip states</dd>

</dl>

bayou2OUwie: Converts bayou data into OUwie format

Description

Usage

Value

Arguments