plot.bayouMCMC

S3 method for plotting bayouMCMC objects

Fits and simulates multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using
Bayesian reversible-jump methods. See Uyeda and Harmon (2014) <DOI:10.1093/sysbio/syu057>.

Josef Uyeda

bayou

Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Josef C. Uyeda

Jon Eastman

Luke Harmon

Abhishek Hari

plot.bayouMCMC function

<dl><dt>x</dt>
<dd>A mcmc chain of class 'bayouMCMC' produced by the function bayou.mcmc and loaded into the environment using load.bayou</dd>
<dt>...</dt>
<dd>Additional arguments passed to <code>plot.mcmc</code> from the <code>coda</code> package</dd></dl>

Arguments

S3 method for plotting bayouMCMC objects — plot.bayouMCMC

<dl>

<dt>x</dt>
<dd>A mcmc chain of class 'bayouMCMC' produced by the function bayou.mcmc and loaded into the environment using load.bayou</dd>


<dt>...</dt>
<dd>Additional arguments passed to <code>plot.mcmc</code> from the <code>coda</code> package</dd>

</dl>

plot.bayouMCMC: S3 method for plotting bayouMCMC objects

Description

Usage

Value

Arguments