plotOUtreesim

A function to visualize a multi-optimum OU process evolving on a phylogeny

Fits and simulates multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using
Bayesian reversible-jump methods. See Uyeda and Harmon (2014) <DOI:10.1093/sysbio/syu057>.

Josef Uyeda

bayou

Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Josef C. Uyeda

Jon Eastman

Luke Harmon

Abhishek Hari

plotOUtreesim function

<dl><dt>pars</dt>
<dd>A bayou parameter list to simulate the OU process from</dd>
<dt>tree</dt>
<dd>A phylogenetic tree</dd>
<dt>ptsperunit</dt>
<dd>A number giving the number of points to simulate per unit time</dd>
<dt>pal</dt>
<dd>A color palette function</dd>
<dt>aph</dt>
<dd>The alpha value for transparency of the lines</dd>
<dt>lwd</dt>
<dd>The width of the lines</dd></dl>

Arguments

A function to visualize a multi-optimum OU process evolving on a phylogeny — plotOUtreesim

<dl>

<dt>pars</dt>
<dd>A bayou parameter list to simulate the OU process from</dd>


<dt>tree</dt>
<dd>A phylogenetic tree</dd>


<dt>ptsperunit</dt>
<dd>A number giving the number of points to simulate per unit time</dd>


<dt>pal</dt>
<dd>A color palette function</dd>


<dt>aph</dt>
<dd>The alpha value for transparency of the lines</dd>


<dt>lwd</dt>
<dd>The width of the lines</dd>

</dl>

plotOUtreesim: A function to visualize a multi-optimum OU process evolving on a phylogeny

Description

Usage

Value

Arguments