pull.pars

Utility function for retrieving parameters from an MCMC chain

Fits and simulates multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using
Bayesian reversible-jump methods. See Uyeda and Harmon (2014) <DOI:10.1093/sysbio/syu057>.

Josef Uyeda

bayou

Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Josef C. Uyeda

Jon Eastman

Luke Harmon

Abhishek Hari

pull.pars function

<dl><dt>i</dt>
<dd>An integer giving the sample to retrieve</dd>
<dt>chain</dt>
<dd>A bayouMCMC chain</dd>
<dt>model</dt>
<dd>The parameterization used, either "OU", "QG" or "OUrepar"</dd></dl>

Arguments

Utility function for retrieving parameters from an MCMC chain — pull.pars

<dl>

<dt>i</dt>
<dd>An integer giving the sample to retrieve</dd>


<dt>chain</dt>
<dd>A bayouMCMC chain</dd>


<dt>model</dt>
<dd>The parameterization used, either "OU", "QG" or "OUrepar"</dd>

</dl>

pull.pars: Utility function for retrieving parameters from an MCMC chain

Description

Usage

Value

Arguments