bcRep (version 1.3.2)

combineIMGT: Combination of several IMGT output folders

Description

This function combines several IMGT ouput folders. IMGT/HighV-QUEST can analyse data with up to 500.000 sequences. In case one wants to analyse more than 500.000 sequences, FASTA file have to be splitted into smaller files and have to be analysed individually. Afterwards IMGT output folders can be combined using this function.

Usage

combineIMGT(folders = NULL, name = NULL)

Arguments

folders

A list containing folder names

name

Name of the new (combined) project

Value

• Output is a folder containing the 10 combined output files (no 11_Parameters.txt file).

Examples

## Combine folders IMGT1a, IMGT1b, IMGT1c to one folder named "NewProject"
combineIMGT(folders = c("pathTo/IMGT1a", "pathTo/IMGT1b", "pathTo/IMGT1c"), 
name = "NewProject)