bcRep (version 1.3.2)

readIMGT: Read IMGT/HighV-QUEST output files

Description

This function reads IMGT/HighV-QUEST output files into a data frame.

Usage

readIMGT(data, filterNoResults = TRUE)

Arguments

data

path and file name of IMGT/HighV-QUEST output file

filterNoResults

Shall sequences without any information be excluded? (default: TRUE)

Value

• Output is a data frame containing IMGT/HighV-QUEST output data.

Details

"-" or spaces are be converted to "_" (single quotes are ignored).

References

IMGT/V-QUEST Documentation: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#output3

Examples

tab<-readIMGT("PathTo/file.txt",filterNoResults=TRUE)
str(tab)