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bcTSNE (version 0.11.1)

Projected t-SNE for Batch Correction

Description

Implements the projected t-SNE method for batch correction of high-dimensional data. Please see Aliverti et al. (2020) for more information.

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Install

install.packages('bcTSNE')

Monthly Downloads

13

Version

0.11.1

License

GPL-3

Issues

0

Pull Requests

0

Stars

6

Forks

1

Maintainer

Dayne L Filer

Last Published

December 1st, 2021

Functions in bcTSNE (0.11.1)

sqdist

Calculate squared Euclidean distance
grad

Calculate t-SNE gradient
zeroMean

Subtract the column means from X
ssx

Sum of squares
ols

Ordinary least squares, solves B = AX for X.
calcPvals

Calculate t-SNE p-values based on a distance matrix
bctsne

Calculate BC t-SNE by orthogonal gradient descent
apat

A + t(A)