bdclean v0.1.15

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A User-Friendly Biodiversity Data Cleaning App for the Inexperienced R User

Provides features to manage the complete workflow for biodiversity data cleaning. Uploading data, gathering input from users (in order to adjust cleaning procedures), cleaning data and finally, generating various reports and several versions of the data. Facilitates user-level data cleaning, designed for the inexperienced R user. T Gueta et al (2018) <doi:10.3897/biss.2.25564>. T Gueta et al (2017) <doi:10.3897/tdwgproceedings.1.20311>.

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Build Status AppVeyor build status Coverage status

bdclean

User-friendly biodiversity data cleaning pipeline

bdclean will provide features to manage complete pipeline for biodiversity data cleaning. A modular approach to plug in data checking and cleaning functions would make this package one stop shop for many biodiversity data cleaning needs.

Install

From CRAN

install.packages("bdclean")

Development version, from GitHub

library("devtools")
devtools::install_github("bd-R/bdclean")
library("bdclean")

Using bdclean

run_bdclean()

Cleaning reports should be created in Your-Working-Directory\CleaningReports

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Functions in bdclean

Name Description
cleaning_function Data decision function (binary decision) required in bdclean internal usage.
bdclean bdclean: Biodiversity Data Cleaning Workflows.
BdQuestion-class The Question Reference Class
clean_data Data cleaning according to Questionnaire Responses.
BdQuestionContainer-class The Question Container Reference Class
taxo_level Clean data based on lower taxon level
temporal_resolution Clean data based on temporal resolution
create_report_data Generate data required to create report, function required in bdclean internal usage.
get_checks_list Returning checks list, function required in bdclean internal usage.
earliest_date Clean data based on earliest date.
perform_Cleaning Data decision function (threshold tuning) required in bdclean internal usage.
get_user_response Internal function for getting user response
run_questionnaire Execute the Questionnaire and save user responses.
spatial_resolution Clean data based on spatial resolution
run_bdclean Launch bdclean Shiny Application
create_default_questionnaire Create the package default Questionnaire.
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Details

Type Package
Date 2019-04-10
License GPL-3
URL https://github.com/bd-R/bdclean, https://bd-r.github.io/The-bdverse/index.html
BugReports https://github.com/bd-R/bdclean/issues
RoxygenNote 6.1.1
LazyData true
NeedsCompilation no
Packaged 2019-04-10 08:16:43 UTC; Thiloshon
Repository CRAN
Date/Publication 2019-04-11 14:45:17 UTC

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