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bdclean

User-friendly biodiversity data cleaning pipeline

bdclean will provide features to manage complete pipeline for biodiversity data cleaning. A modular approach to plug in data checking and cleaning functions would make this package one stop shop for many biodiversity data cleaning needs.

Install

From CRAN

install.packages("bdclean")

Development version, from GitHub

library("devtools")
devtools::install_github("bd-R/bdclean")
library("bdclean")

Using bdclean

run_bdclean()

Cleaning reports should be created in Your-Working-Directory\CleaningReports

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Version

Install

install.packages('bdclean')

Monthly Downloads

30

Version

0.1.15

License

GPL-3

Issues

Pull Requests

Stars

Forks

Maintainer

Thiloshon Nagarajah

Last Published

April 11th, 2019

Functions in bdclean (0.1.15)

cleaning_function

Data decision function (binary decision) required in bdclean internal usage.
bdclean

bdclean: Biodiversity Data Cleaning Workflows.
BdQuestion-class

The Question Reference Class
clean_data

Data cleaning according to Questionnaire Responses.
BdQuestionContainer-class

The Question Container Reference Class
taxo_level

Clean data based on lower taxon level
temporal_resolution

Clean data based on temporal resolution
create_report_data

Generate data required to create report, function required in bdclean internal usage.
get_checks_list

Returning checks list, function required in bdclean internal usage.
earliest_date

Clean data based on earliest date.
perform_Cleaning

Data decision function (threshold tuning) required in bdclean internal usage.
get_user_response

Internal function for getting user response
run_questionnaire

Execute the Questionnaire and save user responses.
spatial_resolution

Clean data based on spatial resolution
run_bdclean

Launch bdclean Shiny Application
create_default_questionnaire

Create the package default Questionnaire.