limmaResults-class

[,limmaResults-method

dim,limmaResults-method

ArrayWeights

ArrayWeights,limmaResults-method

ArrayWeights<-

ArrayWeights<-,limmaResults,numeric-method

DesignMatrix

DesignMatrix,limmaResults-method

DesignMatrix<-

DesignMatrix<-,limmaResults,matrix-method

ContrastMatrix

ContrastMatrix,limmaResults-method

ContrastMatrix<-

ContrastMatrix<-,limmaResults,matrix-method

LogOdds

LogOdds,limmaResults-method

LogOdds<-

LogOdds<-,limmaResults,matrix-method

LogFC

LogFC,limmaResults-method

LogFC<-

LogFC<-,limmaResults,matrix-method

PValue

PValue,limmaResults-method

PValue<-

PValue<-,limmaResults,matrix-method

plot,limmaResults-method


  Container for results from a limma differential expression analysis


classes

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio.  Methods for quality assessment and low-level analysis are provided.

limmaResults-class: Class "limmaResults"

Description

Arguments