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beadarrayMSV (version 1.0.4.1)

Analysis of Illumina BeadArray SNP data including MSV markers

Description

Imports bead-summary data from Illumina scanner. Pre-processes using a suite of optional normalizations and transformations. Clusters and automatically calls genotypes, critically able to handle markers in duplicated regions of the genome (multisite variants; MSVs). Interactive clustering if needed. MSVs with variation in both paralogs may be resolved and mapped to their respective chromosomes. Quality control including pedigree checking and visual assessment of clusters. Too large data-sets are handled by working on smaller subsets of the data in sequence.

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Install

install.packages('beadarrayMSV')

Monthly Downloads

59

Version

1.0.4.1

License

GPL (>= 2)

Maintainer

Last Published

February 18th, 2011

Functions in beadarrayMSV (1.0.4.1)