beadarraySNP (version 1.38.0)

BeadstudioQC: Quality control of Beadstudio report files

Description

When data has been imported using a Beadstudio samplesheet and reportfile, these functions can be used to generate quality measures

Usage

BeadstudioQC(object, QClist = list(), arrayType = "Sentrix96")
pdfBeadstudioQC(QClist, basename = "beadstudio", by = 10)

Arguments

object

SnpSetIllumina object.

QClist

list, result of previous call to BeadstudioQC

arrayType

character, type of array

basename

character, prefix for PDF files. This name will be added before the Barcode of the chip

by

integer, number of samples in barplot, see reportSamplePanelQC

Value

The BeadstudioQC function generates a list of QCIllumina objects The pdfBeadstudioQC function generates a pdf-file for each QCIllumina object in the list

See Also

pdfQC,calculateQCarray