ident_bead_pop

This is a convenience function which allows to subset the data before calling
<code>identify_analyte()</code>. The data is subset only if <code>.column_name</code> and
<code>.cluster</code> are given. Otherwise, the function is identical to calling
<code>identify_analyte()</code> directly.

internal

Reproducible and automated analysis of multiplex bead assays such
as CBA (Morgan et al. 2004; <doi: 10.1016/j.clim.2003.11.017>), LEGENDplex
(Yu et al. 2015; <doi: 10.1084/jem.20142318>), and MACSPlex (Miltenyi
Biotec 2014; Application note: Data acquisition and analysis without the
MACSQuant analyzer;
<https://www.miltenyibiotec.com/upload/assets/IM0021608.PDF>). The
package provides functions for streamlined reading of fcs files, and
identification of bead clusters and analyte expression. The package eases
the calculation of standard curves and the subsequent calculation of the
analyte concentration.

Ulrik Stervbo

beadplexr

Analysis of Multiplex Cytometric Bead Assays

ident_bead_pop function

<dl><dt>.analytes</dt>
<dd>A vector or list giving the IDs of the analytes.</dd>
<dt>.column_name</dt>
<dd>A character giving the name of the column to subset by.</dd>
<dt>.cluster</dt>
<dd>A character of the length of one giving the element to subset
by.</dd>
<dt>.call_args</dt>
<dd>A list giving the parameters passed on to <code>identify_analyte()</code>.</dd>
<dt>df</dt>
<dd>A tidy data.frame.</dd>
<dt>.data</dt>
<dd>Deprecated. Use <code>df</code>.</dd></dl>

Arguments

Identify bead populations — ident_bead_pop

<dl>

<dt>.analytes</dt>
<dd>A vector or list giving the IDs of the analytes.</dd>


<dt>.column_name</dt>
<dd>A character giving the name of the column to subset by.</dd>


<dt>.cluster</dt>
<dd>A character of the length of one giving the element to subset
by.</dd>


<dt>.call_args</dt>
<dd>A list giving the parameters passed on to <code>identify_analyte()</code>.</dd>


<dt>df</dt>
<dd>A tidy data.frame.</dd>


<dt>.data</dt>
<dd>Deprecated. Use <code>df</code>.</dd>

</dl>

ident_bead_pop: Identify bead populations

Description

Usage

Value

Arguments

Details

Examples