This function plots objects returned by the beast function. All output is diverted to a pdf file provided in the fileName argument.
# S3 method for beast.object
plot(x, fileName, width, height, pointsize, ylab, xlab, timeScale, myPal, boxwex, ...)An object of class beast.object, which is returned by the beast function.
Name of the output pdf file.
Width of pdf file. Default: 9
Height pdf file. Default: 6
Pointsize. Default: 12
\(y\)-axis label. Default: x.
\(x\)-axis label. Default: t.
A multiplicative-factor which will be used to scale the \(x\)-axis labels. For example, if time-points correspond to 10-minute periods, then setting timeScale = 1/6 will make the \(x\)-axis labels correspond to hours. Default: timeScale = 1.
Vector of colors that will be used to produce the plot with all time-series overlayed. If the distinct values of the inferred numbers of change-points is less than 10, the Set1 pallete of the RColorBrewer library is used. Otherwise, the user has to manually define the colors.
A scale factor to be applied to all boxes. The appearance of the plot can be improved by making the boxes narrower or wider. Default: 0.2.
ignored.
The function will produce a plot with all time-series coloured according to the corresponding number of change-points. In addition, it will generate individual plots per time-series displaying the observed data with boxplots which summarize the posterior distribution of change-points locations, conditionally on the most probable number of change-points.