check_can_create_tracelog_file

Check if the MCMC's tracelog file can be created.
Will <a href="/link/stop?package=beastier&version=2.5" data-mini-rdoc="beastier::stop">stop</a> if not.
If the tracelog file already exists,
it is assumed that a new file can be created,
by overwriting the existing one.

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAST2' is a command-line tool.
This package provides a way to call 'BEAST2'
from an 'R' function call.

Richel Bilderbeek

beastier

Call 'BEAST2'

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

Jason Griffiths 

Thijs Janzen

check_can_create_tracelog_file function

<dl><dt>beast2_options</dt>
<dd>a set of BEAST2 options,
that are the R equivalent of the BEAST2 command-line options,
as can be created by create_beast2_options</dd></dl>

Arguments

Author

Check if the MCMC's tracelog file can be created.
Will <a href='https://rdrr.io/r/base/stop.html'>stop</a> if not.
If the tracelog file already exists,
it is assumed that a new file can be created,
by overwriting the existing one.

Internal function to check if the MCMC's tracelog file can be created. — check_can_create_tracelog_file

<dl>

<dt>beast2_options</dt>
<dd>a set of BEAST2 options,
that are the R equivalent of the BEAST2 command-line options,
as can be created by create_beast2_options</dd>

</dl>

check_can_create_tracelog_file: Internal function to check if the MCMC's tracelog file can be created.

Description

Usage

Value

Arguments

Author