beastier (version 2.5)

create_beast2_validate_cmd_jar: Creates the terminal command to validate a BEAST2 input file using a call to the launcher.jar file

Description

Creates the terminal command to validate a BEAST2 input file using a call to the launcher.jar file

Usage

create_beast2_validate_cmd_jar(
  input_filename,
  beast2_jar_path = get_default_beast2_jar_path()
)

Value

a character vector, of which the first element is the command (java, in this case), and the others are arguments (-jar, in this case, followed by more arguments.

Arguments

input_filename

the name of a BEAST2 input XML file. This file usually has an .xml extension. Use create_temp_input_filename to create a temporary filename with that extension.

beast2_jar_path

name of the BEAST2 jar file (usually has a .jar extension). Use get_default_beast2_jar_path to get the default BEAST jar file's path

Author

Richèl J.C. Bilderbeek

Examples

check_empty_beaustier_folders()

if (is_beast2_installed() && beautier::is_on_ci()) {
  create_beast2_validate_cmd_jar(
    input_filename = "input.xml"
  )
}

check_empty_beaustier_folders()