beastier (version 2.5)

extract_treelog_filename_from_beast2_input_file: Internal function to extract the treelog filename for a BEAST2 input file

Description

Extract the treelog filename from a BEAST2 input file

Usage

extract_treelog_filename_from_beast2_input_file(input_filename)

Value

the treelog filename for a BEAST2 input file

Arguments

input_filename

the name of a BEAST2 input XML file. This file usually has an .xml extension. Use create_temp_input_filename to create a temporary filename with that extension.

Author

Richèl J.C. Bilderbeek

Examples

if (beautier::is_on_ci()) {

  beast2_input_filename <- get_beastier_tempfilename()

  beautier::create_beast2_input_file_from_model(
    input_filename = beautier::get_beautier_path("test_output_0.fas"),
    output_filename = beast2_input_filename
  )
  extract_treelog_filename_from_beast2_input_file(
    input_filename = beast2_input_filename
  )
  file.remove(beast2_input_filename)

  remove_beaustier_folders()
}