upgrade_beast2

Deprecated function to upgrade BEAST2.

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAST2' is a command-line tool.
This package provides a way to call 'BEAST2'
from an 'R' function call.

Richel Bilderbeek

beastier

Call 'BEAST2'

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

Jason Griffiths 

Thijs Janzen

upgrade_beast2 function

<dl><dt>folder_name</dt>
<dd>name of the folder where the BEAST2 files will
be put.
The name of the BEAST2 binary file will be at
<code>[folder_name]/beast/bin/beast</code>
The name of the BEAST2 jar file will be at
<code>[folder_name]/beast/lib/launcher.jar</code></dd>
<dt>os</dt>
<dd>name of the operating system,
must be <code>unix</code> (Linux, Mac) or <code>win</code> (Windows)</dd></dl>

Arguments

Author

Deprecated function to upgrade BEAST2. — upgrade_beast2

<dl>

<dt>folder_name</dt>
<dd>name of the folder where the BEAST2 files will
be put.
The name of the BEAST2 binary file will be at
<code>[folder_name]/beast/bin/beast</code>
The name of the BEAST2 jar file will be at
<code>[folder_name]/beast/lib/launcher.jar</code></dd>


<dt>os</dt>
<dd>name of the operating system,
must be <code>unix</code> (Linux, Mac) or <code>win</code> (Windows)</dd>

</dl>

upgrade_beast2: Deprecated function to upgrade BEAST2.

Description

Usage

Value

Arguments

Author