check_gtr_site_model

Use create_gtr_site_model to create a valid
GTR nucleotide substitution model.

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richèl J.C. Bilderbeek

beautier

'BEAUti' from R

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Pedro Taucce

Olivier Roy

Jana Riederer

check_gtr_site_model function

<dl><dt>gtr_site_model</dt>
<dd>a GTR site model,
as returned by <code>create_gtr_site_model</code></dd></dl>

Arguments

Check if the gtr_site_model is a valid
GTR nucleotide substitution model. — check_gtr_site_model

<dl>

<dt>gtr_site_model</dt>
<dd>a GTR site model,
as returned by <code>create_gtr_site_model</code></dd>

</dl>

Check if the <code>gtr_site_model</code> is a valid
GTR nucleotide substitution model.

check_gtr_site_model: Check if the `gtr_site_model` is a valid GTR nucleotide substitution model.

Description

Usage

Value

Arguments

Examples