create_beast2_beast_xml

The <code>&lt;beast ...&gt;</code> XML is the XML at the start of a BEAST2
XML input file, directly after the general XML declaration (as
created by create_xml_declaration).

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richèl J.C. Bilderbeek

beautier

'BEAUti' from R

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Pedro Taucce

Olivier Roy

Jana Riederer

create_beast2_beast_xml function

<dl><dt>beauti_options</dt>
<dd>one BEAUti options object,
as returned by <code>create_beauti_options</code></dd></dl>

Arguments

Author

Create the &lt;beast ...&gt; XML — create_beast2_beast_xml

<dl>

<dt>beauti_options</dt>
<dd>one BEAUti options object,
as returned by <code>create_beauti_options</code></dd>

</dl>

Create the <code>&lt;beast ...&gt;</code> XML

create_beast2_beast_xml: Create the `<beast ...>` XML

Description

Usage

Value

Arguments

Author

Examples