create_data_xml

Create the <code>&lt;data ..&gt;</code> XML

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richèl J.C. Bilderbeek

beautier

'BEAUti' from R

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Pedro Taucce

Olivier Roy

Jana Riederer

create_data_xml function

<dl><dt>id</dt>
<dd>an alignment's IDs.
An ID can be extracted from its FASTA filename
with <code>get_alignment_ids_from_fasta_filenames</code>)</dd>
<dt>beast2_version</dt>
<dd>BEAST2 version, for example, <code>"2.5"</code></dd></dl>

Arguments

Author

Create the &lt;data ..&gt; XML — create_data_xml

<dl>

<dt>id</dt>
<dd>an alignment's IDs.
An ID can be extracted from its FASTA filename
with <code>get_alignment_ids_from_fasta_filenames</code>)</dd>


<dt>beast2_version</dt>
<dd>BEAST2 version, for example, <code>"2.5"</code></dd>

</dl>

Create the <code>&lt;data ..&gt;</code> XML

create_data_xml: Create the `<data ..>` XML

Description

Usage

Value

Arguments

Author