create_test_ns_inference_model

Create an inference model to be tested by Nested Sampling

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richèl J.C. Bilderbeek

beautier

'BEAUti' from R

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Pedro Taucce

Olivier Roy

Jana Riederer

create_test_ns_inference_model function

<dl><dt>site_model</dt>
<dd>a site model,
as returned by <code>create_site_model</code></dd>
<dt>clock_model</dt>
<dd>a clock model,
as returned by <code>create_clock_model</code></dd>
<dt>tree_prior</dt>
<dd>a tree priors,
as returned by <code>create_tree_prior</code></dd>
<dt>mcmc</dt>
<dd>one MCMC.
Use <code>create_mcmc</code> to create an MCMC.
Use <code>create_ns_mcmc</code> to create an MCMC
 for a Nested Sampling run.
Use <code>check_mcmc</code> to check if an MCMC is valid.
Use <code>rename_mcmc_filenames</code> to rename the filenames in an MCMC.</dd></dl>

Arguments

Author

Create an inference model to be tested by Nested Sampling — create_test_ns_inference_model

<dl>

<dt>site_model</dt>
<dd>a site model,
as returned by <code>create_site_model</code></dd>


<dt>clock_model</dt>
<dd>a clock model,
as returned by <code>create_clock_model</code></dd>


<dt>tree_prior</dt>
<dd>a tree priors,
as returned by <code>create_tree_prior</code></dd>


<dt>mcmc</dt>
<dd>one MCMC.
Use <code>create_mcmc</code> to create an MCMC.
Use <code>create_ns_mcmc</code> to create an MCMC
 for a Nested Sampling run.
Use <code>check_mcmc</code> to check if an MCMC is valid.
Use <code>rename_mcmc_filenames</code> to rename the filenames in an MCMC.</dd>

</dl>

Create an inference model to be tested by Nested Sampling

create_test_ns_inference_model: Create an inference model to be tested by Nested Sampling

Description

Usage

Value

Arguments

Author

See Also

Examples